DAT Deep Dive: Systems Biology and Acid-Base Equilibria
Master human body systems, microbiology, chemical equilibria, and PAT 3D visualization with targeted test strategies for the DAT science section.
DAT Deep Dive: Systems Biology and Acid-Base Equilibria
Succeed on test day with free flashcards covering human body systems, microbiology, chemical equilibrium, and perceptual ability. This lesson focuses on high-yield biology topicsβcardiovascular, respiratory, immune, and excretory systemsβalongside acid-base chemistry and advanced PAT techniques that build on earlier DAT fundamentals. At lesson 4 of 10, you're ready to tackle integrated systems thinking and apply buffer concepts to real dental scenarios.
Welcome to Integrated Systems Biology π§¬
The DAT Biology section contains 40 questions in just 90 minutes of science testing, making it the highest-yield area to master. While earlier lessons covered cell biology, genetics, and metabolism, this lesson shifts focus to organismal biologyβhow systems work together to maintain homeostasis. You'll also deepen your understanding of acid-base equilibria, critical for both general chemistry questions and understanding physiological pH regulation.
Why This Matters for Dentistry: Dentists must understand cardiovascular responses during procedures (anesthesia risks), immune responses (infection control), respiratory function (sedation safety), and pH buffering (saliva, demineralization). These aren't abstract conceptsβthey're daily clinical realities.
Core Concept 1: Cardiovascular System Integration π«
Heart Anatomy and Blood Flow
The heart is a four-chambered pump that maintains separate pulmonary and systemic circuits. Understanding blood flow sequence is essential for DAT questions:
BLOOD FLOW PATHWAY
Vena Cava β Right Atrium β Right Ventricle
β
Pulmonary Artery β Lungs (Oβ exchange)
β
Pulmonary Veins β Left Atrium β Left Ventricle
β
Aorta β Systemic Circulation β Back to Vena Cava
π‘ Mnemonic: "Always Pay Attention, Please Leave Ample Space"
- Atrium (right)
- Pulmonary artery
- Alveoli (lungs)
- Pulmonary veins
- Left atrium
- Aorta
- Systemic circulation
Cardiac Cycle Mechanics
The cardiac cycle consists of systole (contraction) and diastole (relaxation):
| Phase | Atria | Ventricles | AV Valves | Semilunar Valves |
|---|---|---|---|---|
| Atrial Systole | Contract | Relaxed (filling) | Open | Closed |
| Ventricular Systole | Relaxed | Contract (eject) | Closed | Open |
| Diastole | Relaxed (filling) | Relaxed (filling) | Open | Closed |
Key Point: AV valves (tricuspid, mitral) prevent backflow into atria; semilunar valves (pulmonary, aortic) prevent backflow into ventricles.
Blood Pressure Regulation
Blood pressure = Cardiac Output Γ Peripheral Resistance
Regulation involves:
- Baroreceptors (carotid/aortic bodies): Detect pressure changes β autonomic response
- Renin-Angiotensin-Aldosterone System (RAAS): Kidney-mediated long-term control
- Vasopressin (ADH): Water retention β increased blood volume
π DAT Tip: Questions often ask about compensatory responses. If blood pressure drops (hemorrhage), expect: increased heart rate, vasoconstriction, RAAS activation, and ADH release.
Core Concept 2: Respiratory System and Gas Exchange π«
Ventilation Mechanics
Boyle's Law governs breathing: PβVβ = PβVβ
INHALATION EXHALATION Diaphragm contracts β Diaphragm relaxes β Thoracic volume β Thoracic volume β Intrapulmonary pressure β Intrapulmonary pressure β Air flows IN Air flows OUT
Active vs. Passive:
- Inhalation: Active (diaphragm + external intercostals contract)
- Normal exhalation: Passive (elastic recoil)
- Forced exhalation: Active (abdominal + internal intercostals)
Gas Exchange and Transport
Partial Pressure Gradients drive diffusion:
| Location | POβ (mmHg) | PCOβ (mmHg) | Direction |
|---|---|---|---|
| Alveolar air | 104 | 40 | β |
| Deoxygenated blood | 40 | 45 | Oβ in, COβ out |
| Oxygenated blood | 100 | 40 | β |
| Tissue cells | <40 | >45 | Oβ out, COβ in |
Hemoglobin's Role:
- Cooperative binding: First Oβ makes subsequent binding easier (sigmoid curve)
- Bohr Effect: βpH (βCOβ) β βOβ affinity β Oβ release to tissues
- Right shift (high altitude, exercise): Facilitates Oβ unloading
COβ Transport (3 forms):
- 70% as bicarbonate (HCOββ»): COβ + HβO β HβCOβ β HβΊ + HCOββ» (catalyzed by carbonic anhydrase)
- 23% bound to hemoglobin: Carbaminohemoglobin
- 7% dissolved in plasma
π§ Clinical Connection: Hyperventilation β βCOβ β βHβΊ β respiratory alkalosis (pH >7.45). Hypoventilation β βCOβ β βHβΊ β respiratory acidosis (pH <7.35).
Core Concept 3: Immune System Defenses π‘οΈ
Innate vs. Adaptive Immunity
π Immunity Comparison
| Feature | Innate | Adaptive |
|---|---|---|
| Speed | Immediate | Days (first exposure) |
| Specificity | General (pathogens) | Specific (antigens) |
| Memory | None | Yes (secondary response faster) |
| Components | Skin, mucus, phagocytes, complement, inflammation | T cells, B cells, antibodies |
Cell-Mediated Immunity (T Cells)
T Cell Types and Functions:
| Cell Type | Marker | Function |
|---|---|---|
| Helper T cells | CD4 | Activate B cells and cytotoxic T cells; secrete cytokines |
| Cytotoxic T cells | CD8 | Kill infected/cancerous cells via apoptosis |
| Regulatory T cells | CD4/CD25 | Suppress immune response (prevent autoimmunity) |
| Memory T cells | CD4/CD8 | Rapid response upon re-exposure |
π‘ Mnemonic: "CD4 are the 4-helpers, CD8 kill what they hate"
Humoral Immunity (B Cells and Antibodies)
Antibody Structure:
ANTIBODY (IgG)
Variable regions
(antigen binding)
Y
/ \
/ \
βββββ βββββ
β L β β L β Light chains
βββ¬ββ βββ¬ββ
β β
βββ΄ββββββββ΄ββ
β H β Heavy chains
β β
βββββββββββββ
Constant region
(effector functions)
Antibody Classes:
| Class | Location | Function |
|---|---|---|
| IgG | Blood, tissues | Main antibody; crosses placenta; opsonization |
| IgM | Blood | First responder; pentamer (10 binding sites); agglutination |
| IgA | Mucous membranes, saliva | Prevents pathogen attachment to epithelium |
| IgE | Mast cells, basophils | Allergic reactions, parasitic infections |
| IgD | B cell surface | B cell activation (receptor) |
π§ Mnemonic: "GAMED" (in order of abundance): IgG, IgA, IgM, IgE, IgD
Clonal Selection Theory
- Antigen exposure β Binds to specific B cell receptor
- Clonal expansion β That B cell proliferates
- Differentiation β Plasma cells (antibody factories) + Memory B cells
- Secondary response β Faster, stronger upon re-exposure
π DAT Application: Vaccination creates memory cells without disease, enabling rapid response to actual pathogen.
Core Concept 4: Excretory System and Nephron Function π§
Kidney Structure and Filtration
Nephron: Functional unit of the kidney (~1 million per kidney)
NEPHRON STRUCTURE
Afferent arteriole
β
ββββββββββ
βGlomerulusβ β High pressure filtration
ββββββ¬ββββ
β
Bowman's capsule
β
Proximal tubule β 65% reabsorption
β
Loop of Henle β Concentration gradient
β
Distal tubule β Fine-tuning
β
Collecting duct β ADH action
β
Urine to bladder
Three Processes of Urine Formation
| Process | Location | Mechanism | Substances |
|---|---|---|---|
| Filtration | Glomerulus β Bowman's capsule | Pressure-driven (non-selective) | Water, glucose, ions, urea, amino acids |
| Reabsorption | Tubules β Peritubular capillaries | Active/passive transport | 99% water, glucose, amino acids, NaβΊ |
| Secretion | Capillaries β Tubules | Active transport | HβΊ, KβΊ, drugs, toxins |
Countercurrent Multiplier (Loop of Henle)
The descending limb is permeable to water (not salts); the ascending limb actively pumps salts out (impermeable to water):
CORTEX (isotonic)
β Descending (HβO out)
300 mOsm
β
600 mOsm
β
900 mOsm β Ascending (salts out)
β
600 mOsm
β
MEDULLA (hypertonic)
Result: High osmolarity in medulla β ADH can drive water reabsorption from collecting duct β concentrated urine.
π‘ Test Strategy: If a question mentions desert animals or dehydration, think: long loops of Henle, high ADH, concentrated urine.
Hormonal Regulation
| Hormone | Source | Trigger | Effect |
|---|---|---|---|
| ADH (vasopressin) | Posterior pituitary | High osmolarity, low BP | β Water reabsorption (collecting duct) |
| Aldosterone | Adrenal cortex | Low BP, low NaβΊ | β NaβΊ reabsorption, β KβΊ secretion |
| ANP (atrial natriuretic peptide) | Heart atria | High BP, stretch | β NaβΊ reabsorption β β water retention |
Core Concept 5: Acid-Base Equilibria and Buffers βοΈ
Henderson-Hasselbalch Equation
pH = pKβ + log([Aβ»]/[HA])
Where:
- [Aβ»] = conjugate base concentration
- [HA] = weak acid concentration
- pKβ = -log(Kβ)
Key Insight: When pH = pKβ, [Aβ»] = [HA] β Maximum buffering capacity.
Buffer Systems in the Body
1. Bicarbonate Buffer (Primary blood buffer):
COβ + HβO β HβCOβ β HβΊ + HCOββ»
- pH = 6.1 + log([HCOββ»]/[HβCOβ])
- Normal ratio: 20:1 (HCOββ»:HβCOβ) β pH 7.4
- Respiratory control: COβ exhalation
- Renal control: HCOββ» reabsorption/HβΊ secretion
2. Phosphate Buffer (Intracellular, urine):
HβPOββ» β HβΊ + HPOβΒ²β»
- pKβ = 7.2 (closer to physiological pH β effective)
3. Protein Buffers (Hemoglobin):
- Histidine residues can accept/donate HβΊ
- Isohydric principle: COβ transport without pH change
Acid-Base Disorders
| Disorder | pH | Primary Change | Compensation |
|---|---|---|---|
| Respiratory Acidosis | <7.35 | β PCOβ (hypoventilation) | Kidneys β HCOββ» reabsorption |
| Respiratory Alkalosis | >7.45 | β PCOβ (hyperventilation) | Kidneys β HCOββ» reabsorption |
| Metabolic Acidosis | <7.35 | β HCOββ» (diarrhea, ketoacidosis) | Lungs β ventilation (β COβ) |
| Metabolic Alkalosis | >7.45 | β HCOββ» (vomiting, antacids) | Lungs β ventilation (β COβ) |
π§ Mnemonic: "ROME"
- Respiratory Opposite: pH and COβ move in opposite directions
- Metabolic Equal: pH and HCOββ» move in same direction
Dental Application: Saliva as a Buffer
Saliva (pH 6.5-7.5) contains bicarbonate, phosphate, and proteins that neutralize acids from:
- Bacterial fermentation (lactic acid)
- Acidic foods/drinks
Demineralization occurs when pH < 5.5 (critical pH for hydroxyapatite dissolution). Buffering capacity is protective against caries.
Core Concept 6: Microbiology Essentials π¦
Bacterial Structure
GRAM-POSITIVE GRAM-NEGATIVE
Thick peptidoglycan Thin peptidoglycan
(purple stain) (pink stain)
ββββββββ βββββ
β//////β β///β Outer membrane
β//////β βββββ€ (lipopolysaccharide)
β//////β β///β Peptidoglycan
ββββββββ βββββ
Cell membrane Cell membrane
Examples: Examples:
Staphylococcus E. coli
Streptococcus Salmonella
Bacillus Pseudomonas
Key Differences:
| Feature | Gram-Positive | Gram-Negative |
|---|---|---|
| Peptidoglycan | Thick (30-100 layers) | Thin (1-2 layers) |
| Outer membrane | Absent | Present (LPS = endotoxin) |
| Teichoic acids | Present | Absent |
| Antibiotic sensitivity | Penicillin effective | More resistant (outer membrane barrier) |
Viral Replication Cycles
Lytic Cycle:
- Attachment β Virus binds host receptor
- Penetration β Inject DNA/RNA
- Biosynthesis β Hijack host machinery
- Maturation β Assemble new virions
- Lysis β Cell bursts, release viruses
Lysogenic Cycle:
- Integration β Viral DNA integrates into host chromosome (prophage)
- Replication β Prophage replicates with host DNA
- Induction β Stress triggers switch to lytic cycle
π‘ Example: Herpes simplex (cold sores) uses lysogenic cycle β dormant in nerve cells β reactivates under stress.
Prokaryotic vs. Eukaryotic Cells
| Feature | Prokaryotes | Eukaryotes |
|---|---|---|
| Nucleus | No (nucleoid region) | Yes (membrane-bound) |
| Organelles | No membrane-bound organelles | Mitochondria, ER, Golgi, etc. |
| Ribosomes | 70S (50S + 30S) | 80S (60S + 40S) |
| DNA | Circular, no histones | Linear, with histones |
| Cell division | Binary fission | Mitosis/meiosis |
| Size | 1-10 ΞΌm | 10-100 ΞΌm |
Core Concept 7: Advanced PAT - 3D Mental Rotation π²
Cube Counting Strategy
Problem Type: Count cubes with 0, 1, 2, 3, or 4 painted sides in a 3D stack.
Systematic Approach:
3Γ3Γ3 CUBE (27 total cubes)
TOP LAYER (9)
βββββββ¬ββββββ¬ββββββ
β C β E β C β
βββββββΌββββββΌββββββ€
β E β F β E β C = Corner (3 faces)
βββββββΌββββββΌββββββ€ E = Edge (2 faces)
β C β E β C β F = Face (1 face)
βββββββ΄ββββββ΄ββββββ I = Interior (0 faces)
MIDDLE LAYER (9)
βββββββ¬ββββββ¬ββββββ
β E β F β E β
βββββββΌββββββΌββββββ€
β F β I β F β
βββββββΌββββββΌββββββ€
β E β F β E β
βββββββ΄ββββββ΄ββββββ
BOTTOM LAYER (9)
[Same as top layer]
Counting Formula:
- Corners (3 faces): 8 (always for any cube)
- Edges (2 faces): 12(n-2) where n = cube dimension
- Faces (1 face): 6(n-2)Β²
- Interior (0 faces): (n-2)Β³
For 3Γ3Γ3:
- 3 faces: 8 cubes
- 2 faces: 12(1) = 12 cubes
- 1 face: 6(1)Β² = 6 cubes
- 0 faces: 1Β³ = 1 cube
β‘ Speed Tip: Memorize these patterns for 3Γ3Γ3, 4Γ4Γ4, 5Γ5Γ5.
Pattern Folding Technique
Problem: Which 3D shape results from folding a 2D pattern?
Strategy:
- Identify the base: Usually the central square/shape
- Mental folding order: Opposite sides fold up first
- Check adjacencies: Which faces touch?
- Look for impossibilities: Patterns that can't physically fold
π§ Mnemonic: "BASE - Adjacent - Same-side - Eliminate"
EXAMPLE PATTERN:
βββββ
β T β Top
βββββΌββββΌββββ¬ββββ
β L β F β R β B β Left-Front-Right-Back
βββββΌββββΌββββ΄ββββ
β Boβ Bottom
βββββ
Folds into:
T
βββ΄ββ
Lβ F βR
βββ¬ββ
Bo
(B wraps around back)
Common Trap: If two identical symbols/patterns would occupy the same face after folding β impossible pattern.
Angle Ranking Efficiency
Problem: Rank angles from smallest to largest.
β‘ Quick Method:
- Identify 90Β° (perpendicular reference)
- Identify 45Β° (halfway to 90Β°)
- Group by size: <45Β°, 45Β°-90Β°, >90Β°
- Compare within groups
Visual Estimation:
- 30Β°: Shallow wedge (1/3 to 90Β°)
- 60Β°: Equilateral triangle internal angle
- 120Β°: Wide obtuse (supplement of 60Β°)
- 150Β°: Nearly straight (30Β° from 180Β°)
Worked Examples
Example 1: Cardiovascular Integration
Question: A patient experiences significant blood loss from dental surgery. Describe the immediate and short-term compensatory responses.
Solution:
Immediate (seconds to minutes):
Baroreceptor response: Decreased stretch in carotid/aortic bodies β sympathetic activation
- β Heart rate (cardiac output)
- β Contractility (stroke volume)
- Vasoconstriction (β peripheral resistance)
- Result: Maintain blood pressure despite β volume
Chemoreceptor input: Potential β Oβ delivery β peripheral chemoreceptors stimulate respiratory rate
Short-term (minutes to hours): 3. RAAS activation: β renal perfusion β renin release β angiotensin II β vasoconstriction + aldosterone
- Aldosterone: β NaβΊ reabsorption β water follows β β blood volume
ADH release: β plasma osmolarity + β blood volume β posterior pituitary secretion
- β Water reabsorption in collecting duct
Fluid shift: Interstitial fluid β capillaries (driven by β hydrostatic pressure)
π Clinical Note: These mechanisms can maintain blood pressure even with 10-15% blood loss. Beyond that, medical intervention needed.
Example 2: Acid-Base Problem
Question: A dental patient hyperventilates due to anxiety, exhaling excessive COβ. Arterial blood gas shows: pH 7.52, PCOβ 28 mmHg, HCOββ» 23 mEq/L. Diagnose and explain.
Solution:
Step 1: Identify primary disorder
- pH 7.52 β Alkalosis (>7.45)
- PCOβ 28 β Low (normal 35-45 mmHg)
- Low COβ with high pH β Respiratory alkalosis
Step 2: Check compensation
- HCOββ» 23 mEq/L β Slightly low (normal 22-26)
- Kidneys have begun compensating by decreasing HCOββ» reabsorption
- Partially compensated (pH still abnormal)
Step 3: Verify with Henderson-Hasselbalch
COβ + HβO β HβCOβ β HβΊ + HCOββ»
- pH = 6.1 + log([HCOββ»]/[HβCOβ])
- [HβCOβ] = 0.03 Γ PCOβ = 0.03 Γ 28 = 0.84 mmol/L
- 7.52 β 6.1 + log(23/0.84) = 6.1 + log(27.4) = 6.1 + 1.44 = 7.54 β
Management: Have patient breathe into paper bag (β COβ rebreathing) or use calming techniques.
Example 3: Nephron Function
Question: Compare urine production in someone well-hydrated vs. dehydrated.
Solution:
| Parameter | Well-Hydrated | Dehydrated |
|---|---|---|
| Blood osmolarity | Low (dilute) | High (concentrated) |
| ADH level | Low | High |
| Collecting duct permeability | Low (few aquaporins) | High (many aquaporins inserted) |
| Water reabsorption | Minimal | Maximal |
| Urine volume | Large (~1.5 L/day) | Small (~0.5 L/day) |
| Urine osmolarity | Low (~100 mOsm/L) - dilute | High (~1200 mOsm/L) - concentrated |
| Urine color | Clear/pale yellow | Dark yellow/amber |
Mechanism Detail:
- ADH binds V2 receptors on collecting duct cells
- Triggers aquaporin-2 insertion into apical membrane
- Water moves from lumen β cells β peritubular capillaries (osmotic gradient established by Loop of Henle)
- Urea recycling contributes to medullary hypertonicity
π‘ Clinical Relevance: Diabetes insipidus (ADH deficiency) β massive dilute urine output. Dental patients may need bathroom breaks!
Example 4: PAT Cube Counting
Question: A 4Γ4Γ4 cube is painted on all sides then cut into unit cubes. How many cubes have exactly 2 faces painted?
Solution:
Edge cubes (not corners) have exactly 2 painted faces.
Formula approach:
- Total edges on a cube: 12
- Cubes per edge: n = 4
- Corner cubes per edge: 2 (don't count these)
- Edge cubes per edge: n - 2 = 4 - 2 = 2
- Total edge cubes: 12 edges Γ 2 cubes/edge = 24 cubes
Verification by visualization:
TOP FACE VIEW (4Γ4): βββββ¬ββββ¬ββββ¬ββββ β C β E β E β C β C = corner (3 faces painted) βββββΌββββΌββββΌββββ€ E = edge (2 faces painted) β E β F β F β E β F = face (1 face painted) βββββΌββββΌββββΌββββ€ β E β F β F β E β βββββΌββββΌββββΌββββ€ β C β E β E β C β βββββ΄ββββ΄ββββ΄ββββ Edge cubes on top face: 8 (2 per side Γ 4 sides) Same for bottom face: 8 Middle 2 layers: 4 per layer Γ 2 = 8 Total: 8 + 8 + 8 = 24 β
β‘ Speed Formula: For nΓnΓn cube, edge cubes = 12(n-2)
- 3Γ3Γ3: 12(1) = 12
- 4Γ4Γ4: 12(2) = 24
- 5Γ5Γ5: 12(3) = 36
Common Mistakes
β οΈ Mistake 1: Confusing pulmonary circulation direction
- Error: Thinking pulmonary artery carries oxygenated blood
- Reality: Arteries carry blood AWAY from heart (regardless of Oβ content). Pulmonary artery carries deoxygenated blood to lungs.
- Fix: Memorize: "Arteries = Away, Veins = Venture back"
β οΈ Mistake 2: Mixing up acid-base compensation
- Error: Expecting pH to normalize with compensation
- Reality: Compensation brings pH toward normal but rarely fully corrects it (would lose the drive to compensate)
- Fix: "Compensation never overcompensates"
β οΈ Mistake 3: Forgetting ADH's renal target
- Error: Thinking ADH affects proximal tubule
- Reality: ADH acts on collecting duct (distal nephron)
- Fix: Most reabsorption happens proximally (constitutive), but collecting duct is regulatory
β οΈ Mistake 4: IgM vs. IgG timing
- Error: Thinking IgG appears first in infection
- Reality: IgM = first responder (days 1-10), IgG = sustained response (day 10+, remains elevated)
- Fix: "M = iMmediate" (even though it takes days)
β οΈ Mistake 5: PAT cube counting - forgetting interior cubes
- Error: Only counting surface cubes
- Reality: Interior cubes (no painted faces) exist in cubes 3Γ3Γ3 and larger
- Fix: Use formula (n-2)Β³ or visualize slicing off outer shell
β οΈ Mistake 6: Gram stain color reversal
- Error: Gram-positive = pink
- Reality: Gram-positive = PURPLE (thick peptidoglycan retains crystal violet)
- Fix: "Positive = Purple" (alliteration)
β οΈ Mistake 7: Buffer capacity at extremes
- Error: Thinking buffers work equally at all pH
- Reality: Maximum capacity when pH = pKβ (equal amounts of acid/conjugate base)
- Fix: Henderson-Hasselbalch β when pH = pKβ, log term = 0, ratio = 1:1
Test-Taking Strategies for 90-Minute Science Section β±οΈ
Time Management
Total: 90 minutes for 100 questions (Biology 40, Gen Chem 30, Org Chem 30)
Ideal pace: ~54 seconds/question, but distribute strategically:
| Section | Questions | Time Allocation | Pace |
|---|---|---|---|
| Biology | 40 | 35-38 min | 52-57 sec/q |
| General Chem | 30 | 26-28 min | 52-56 sec/q |
| Organic Chem | 30 | 26-28 min | 52-56 sec/q |
| Review | β | 2-3 min | β |
π‘ Pro Strategy: Biology has most questions but often straightforward recall β move quickly, bank time for harder chem calculations.
The Two-Pass Method
Pass 1 (60-65 minutes):
- Answer all questions you know immediately (<30 seconds)
- Flag and skip anything requiring >60 seconds
- Goal: Secure ~75-80% of points quickly
Pass 2 (20-25 minutes):
- Return to flagged questions
- Full problem-solving mode
- Eliminate wrong answers, make educated guesses
Pass 3 (2-3 minutes):
- Quick check of marked answers
- Never leave blanks (no penalty for guessing)
Pattern Recognition for Biology
High-yield topics (expect 3-5 questions each):
- Cell biology (membranes, organelles, transport)
- Genetics (Mendelian, molecular)
- Evolution (mechanisms, evidence)
- Human systems (cardio, respiratory, digestive, nervous, immune, excretory, endocrine, reproductive)
- Ecology (populations, communities, ecosystems)
- Development (embryology basics)
Quick elimination:
- Extreme language: "always," "never," "only" β usually wrong
- Two opposites in answers: One is likely correct
- Longest answer: Often correct (more qualifiers = more accurate)
- "All of the above": If you know 2 are correct, choose this
Chemistry Calculation Shortcuts
Dimensional analysis: Always include units, cancel systematically
Estimation: Round to one significant figure for quick checks
- Example: (8.97 Γ 10Β²)(3.12 Γ 10β»β΄) β (9 Γ 10Β²)(3 Γ 10β»β΄) = 27 Γ 10β»Β² = 0.27
Memorize common values:
- ln(2) β 0.693 (half-life problems)
- R = 0.0821 LΒ·atm/(molΒ·K) or 8.314 J/(molΒ·K)
- 1 atm = 760 mmHg = 101.3 kPa
- Β°C = K - 273 (or 273.15 for precision)
pH shortcuts:
- [HβΊ] = 10β»α΅α΄΄ β pH 3 means [HβΊ] = 10β»Β³ = 0.001 M
- pH + pOH = 14 (at 25Β°C)
Key Takeaways
π Quick Reference Card - Systems Biology
| Cardiovascular | Blood flow: Vena cava β Right heart β Lungs β Left heart β Aorta Regulation: Baroreceptors (fast), RAAS (slow), ADH (volume) |
| Respiratory | Boyle's Law drives ventilation Oβ/COβ exchange via partial pressure gradients Bohr Effect: βpH β βOβ release |
| Immune | CD4 = Helper T (activate), CD8 = Cytotoxic T (kill) IgM first (pentamer), IgG sustained (crosses placenta) Clonal selection: Antigen β Expansion β Memory |
| Excretory | Filtration (glomerulus) β Reabsorption (tubules) β Secretion (tubules) Countercurrent multiplier creates medullary gradient ADH β collecting duct aquaporins β concentrated urine |
| Acid-Base | pH = pKa + log([Aβ»]/[HA]) Bicarbonate buffer: pH 7.4 when HCOββ»:HβCOβ = 20:1 ROME: Respiratory Opposite, Metabolic Equal |
| Microbiology | Gram-positive: Thick peptidoglycan, purple stain Gram-negative: Thin peptidoglycan, LPS outer membrane, pink Lytic (immediate killing) vs. Lysogenic (integrated dormancy) |
π― Biology Mastery Checklist:
- β Can trace blood through complete cardiac cycle
- β Understand gas exchange gradients and Bohr Effect
- β Distinguish innate vs. adaptive immunity components
- β Know T cell types (CD4/CD8) and antibody classes (GAMED)
- β Explain nephron three processes and hormonal control
- β Apply Henderson-Hasselbalch to buffer problems
- β Differentiate Gram-positive vs. Gram-negative bacteria
β‘ PAT Success Formula:
- Cube counting: Memorize 12(n-2) for edges, 6(n-2)Β² for faces
- Pattern folding: Identify base, check adjacencies, eliminate impossibilities
- Angle ranking: Use 45Β° and 90Β° as reference points
- Practice: 20-30 minutes daily on timed PAT drills
π Test Day Priorities:
- Speed on recall questions: Biology facts, nomenclature β 30 sec each
- Accuracy on calculations: Double-check units and decimal placement
- Strategic guessing: Eliminate 2-3 options, choose from remaining
- Flag and move: Don't waste 5 minutes on one question worth 1% of score
π Further Study
Khan Academy - MCAT Prep (Biology Systems): https://www.khanacademy.org/test-prep/mcat/organ-systems
- Video explanations of cardiovascular, respiratory, immune, and renal systems with practice questions
DAT Bootcamp - PAT Generator: https://www.datbootcamp.com/pat-practice-tests/
- Unlimited timed PAT practice with adaptive difficulty and performance tracking
LibreTexts Chemistry - Acid-Base Equilibria: https://chem.libretexts.org/Bookshelves/General_Chemistry/Map%3A_Chemistry_-_The_Central_Science_(Brown_et_al.)/16%3A_AcidBase_Equilibria
- Comprehensive coverage of buffer systems, Henderson-Hasselbalch applications, and physiological buffering
Next Steps: Lesson 5 will cover molecular biology techniques (PCR, gel electrophoresis, cloning), redox reactions and electrochemistry, and advanced organic chemistry synthesis strategies. You'll also tackle PAT timing optimization and learn to integrate knowledge across all science sections for interdisciplinary questions.